MetaPathways

Documentation

• Overview
  • Pipeline
  • Bibliography
• Quick Start (TLDR;)
  • Try it with Mamba (recommended)
  • Try it with Docker
• Installation
  • Mamba (recommended)
  • Conda
  • Docker
• Full Usage
  • Build Reference Databases
  • Annotate a Metagenome
  • Add MAGs to MP output
  • Environmental Pathway Genome Databases (ePGDBs)